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Test Code HCCGP 275 Gene Cancer NGS Panel

Additional Test Codes

Epic Order Name: HUMAN COMP CANCER GENE PANEL NON BLOOD
Sunquest Order Code: HCCGP
Epic Px Code: LAB8203

Specimen Collection Type

Bone Marrow Aspirate: EDTA (lavender-top) tube, 3.0 mL (Minimum 0.5 mL);
FFPE tissue: 5 to 10 slides, each up to 10 ?m thick plus one additional H&E reference slide with tumor tissue marked.

Minimum Collection Volume

Bone Marrow Aspirate: 0.5 ml;
FFPE: 5 unstained slides + 1 representative H&E

Additional Information / Notes

Detects somatic small nucleotide variations (SNVs) and small insertions/deletions (INDELs) in 275 genes of importance across various types of cancers, including but not limited to breast cancers, lung cancers, colorectal cancers, and melanomas, as well as various hematologic neoplasms. The presence of gene variants in various cancers can serve as a prognostic indicator and can impact a patient’s response to some anti-cancer therapies, making detection of gene variants useful in guiding treatment decisions.

Genes Tested: ABL1, ADA, ANKRD26, ASXL1, ASXL2, ATM, ATRX, BCL6, BCOR, BCORL1, BCR, BIRC3, BLM, BRAF, BRCA1, BRCA2, BRINP3, C17orf97, CALR, CARD11, CBL, CBLB, CBLC, CDKN2A, CEBPA, CHEK2, CREBBP, CRLF2, CSF1R, CSF3R, CTCF, CUX1, DAXX, DDX41, DNM2, DNMT1, DNMT3A, EED, EGFR, ELANE, EP300, ETNK1, ETV6, EZH2, FAM154B, FAM47A, FAS, FBXW7, FLRT2, FLT3, GATA1, GATA2, GJB3, GNAS, HNRNPK, HRAS, IDH1, IDH2, IKZF1, IKZF3, IL7R, JAK1, JAK2, JAK3, KAT6A, KCNA4, KCNK13, KDM6A, KDR, KIT, KLHDC8B, KLHL6, KMT2A, KMT2C, KRAS, LRRC4, LUC7L2, MAP2K1, MLH1, MPL, MSH2, MSH6, MYC, MYD88, NBN, NF1, NOTCH1, NPAT, NPM1, NRAS, NSD1, NTRK3, OR13H1,OR8B12, P2RY2, PAX5, PCDHB1, PDGFRA, PHF6, PML, PMS2, PRAMEF2, PRF1, PRPF40B, PRPF8, PTEN, PTPN11, RAD21, RB1, RELN, RUNX1, SETBP1, SF1, SF3A1, SF3B1, SH2B3, SH2D1A, SMARCB1, SMC1A, SMC3, SRP72, SRSF2, STAG2, STAT3, STXBP2, SUZ12, TAL1, TERC, TERT, TET2, TNFRSF13B, TP53, TPMT, TUBA3C, U2AF1, U2AF2, WAS, WRN, WT1, XPO1, ZRSR2.

Reference Range

An interpretive report will be provided

Critical Value

N/A

Specimen Availability for Add-on Testing

Only for additional CMOL testing; additional sample may be required, see test sample requirements and stability.

Specimen Stability

Blood/Bone Marrow Aspirate: 96 hrs at 4°C;
FFPE: n/a.

Day(s) Performed

9:00 AM – 5:00 PM, Monday through Friday; varies

Performing Lab - Department

Clinical Molecular Oncology Laboratory

CPT Code

81455

LOINC Code

N/A

Clinical Indications

N/A

Interpretation

An interpretive report will be provided

Test Alias

N/A

Rejection Criteria

Frozen, severely hemolyzed, or clotten specimen. FFPE tumor specimen with a tumor percentage < 5 %, or with otherwise inadequate cellular content.