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Test Code HCGNS3 Hepatitis C Virus (HCV) Genotyping Reflex to NS3 Drug Resistance

Clinical Indications

The HCV Genotyping with NS3 Drug
Resistance assay detects NS3 (nonstructural protein 3) mutations
and polymorphisms in HCV genotypes 1a and
1b that are associated with resistance to direct-acting protease
inhibitors (antivirals) glecaprevir (in Mavyret®), grazoprevir
(in Zepatier®), paritaprevir (in Viekira Pak/XR® and
Technivie®), simeprevir (Olysio®), and voxilaprevir (in
Vosevi®). The assay is intended to be used for patients with
HCV viral loads who are being screened
prior to treatment with the direct-acting HCV protease antivirals, or during treatment with
these antivirals when drug resistance is suspected.

Additional Test Codes

Epic Order Name: HEP C VIRUS (HCV) GENOTYPING W NS3 DRUG
RESISTANCE (aka HCGNS3)
Sunquest Order Code: HCGNS3
Epic Px Code: LAB3063

Specimen Collection Type

Preferred: 2 Pearl-top (PPT) tubes
Acceptable: 2 ACD Yellow or 2
EDTA Lavender-top tubes

Minimum Collection Volume

1.5 mL

Reference Range

Genotypes: 1a, 1b, 2a/2c, 2b, 3, 4, 5, and 6
If reflexed to NS3 Drug Resistance:
Mutations in the NS3 gene will be reported as Resistant/None
Detected. Interpretation of gene mutations and association with
antiviral resistance, including glecaprevir (in Mavyret®),
grazoprevir (in Zepatier®), paritaprevir (in Viekira
Pak/XR® and Technivie®), simeprevir (Olysio®), and
voxilaprevir (in Vosevi®) will be provided with the report.
Additionally the presence or absence of mutation Q80K is reported
individually.

Critical Value

n/a

Interpretation

HCV infection is the most common
chronic bloodborne infection in the U.S., with approximately 3.2
million people chronically infected and an additional 17,000
(approx.) new infections acquired annually. The HCV NS3 serine protease plays a critical role in
viral pathogenesis and serves to cleave the viral polyprotein at
several points, releasing the component viral proteins. Multiple
mutations causing resistance to FDA-approved HCV protease
inhibitors have been defined, and the levels of increased
resistance for each mutation have been calculated using
HCV replicons or reporter constructs.
Some of the mutations cause resistance to multiple protease
inhibitors. Knowledge of these mutations is important in patients
since an incomplete suppression of viral replication by an
ineffective drug combination could prevent a sustained viral
response (“cure”), and could readily support the
development of antiviral drug resistance. In addition to detection
of drug resistance during treatment, a screen for the protease Q80K
variant in subtypes 1a is recommended prior to the use of
simeprevir. The manufacturer’s package insert for the
protease inhibitor simeprevir (Olysio®) states as follows:
“Screening patients with HCV
genotype 1a infection for the presence of virus with the NS3 Q80K
polymorphism at baseline is strongly recommended. Alternative
therapy should be considered for patients infected with
HCV genotype 1a containing the Q80K
polymorphism.”

Rejection Criteria

HCV RNA
concentrations too low to allow antiviral resistance testing (less
than 1.5 mL of plasma and/or HCV viral
load less than 1,000 IU/mL), subtypes other than HCV 1a or 1b, whole blood frozen, specimens beyond
their acceptable length of time from collection as listed in the
specimen stability, or specimen types other than those listed.

Specimen Availability for Add-on Testing

This test cannot be added on

Specimen Stability

Frozen: 1 month
Ambient: not acceptable
Refrigerated: not acceptable

Day(s) Performed

Varies

Performing Lab- Department

TUKHS-BH-Mail Outs

CPT Code

87902

LOINC Code

N/A

Test Alias

N/A

Additional Information / Notes

Turnaround time: 4-11 business days from receipt of
specimen.