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Test Code NS3G1A Hepatitis C Virus (HCV) NS3 Drug Resistance for Genotype 1a

Clinical Indications

The Hepatitis C Virus (HCV) NS3 Drug
Resistance for Genotype 1a assay detects NS3 (nonstructural protein
3) mutations and polymorphisms in HCV
genotype 1a that are associated with resistance to direct-acting
protease inhibitors (antivirals) glecaprevir (in Mavyret®),
grazoprevir (in Zepatier®), paritaprevir (in Viekira
Pak/XR® and Technivie®), simeprevir (Olysio®), and
voxilaprevir (in Vosevi®). The assay is intended to be used for
patients with HCV viral loads who are
being screened prior to treatment with the direct-acting
HCV protease antivirals, or during
treatment with these antivirals when drug resistance is
suspected.

Additional Test Codes

Epic Order Name: HEP C VIRUS (HCV) NS3
DRUG RESISTANCE
GENOTYPE 1A (aka NS3G1A)
Sunquest Order Code: NS3G1A
Epic Px Code: LAB3065

Specimen Collection Type

Preferred: 2 Pearl-top (PPT) tubes
Acceptable: 2 ACD Yellow or 2
EDTA Lavender-top tubes

Minimum Collection Volume

1.0 mL

Reference Range

Resistant/None Detected

Critical Value

n/a

Interpretation

HCV infection is the most common
chronic bloodborne infection in the U.S., with approximately 3.2
million people chronically infected and an additional 17,000
(approx.) new infections acquired annually. The HCV NS3 serine protease plays a critical role in
viral pathogenesis and serves to cleave the viral polyprotein at
several points, releasing the component viral proteins. Multiple
mutations causing resistance to FDA-approved HCV protease
inhibitors have been defined, and the levels of increased
resistance for each mutation have been calculated using
HCV replicons or reporter constructs.
Some of the mutations cause resistance to multiple protease
inhibitors. Knowledge of these mutations is important in patients
since an incomplete suppression of viral replication by an
ineffective drug combination could prevent a sustained viral
response (“cure”), and could readily support the
development of antiviral drug resistance. In addition to detection
of drug resistance during treatment, a screen for the protease Q80K
variant in subtypes 1a is recommended prior to the use of
simeprevir. The manufacturer’s package insert for the
protease inhibitor simeprevir (Olysio®) states as follows:
“Screening patients with HCV
genotype 1a infection for the presence of virus with the NS3 Q80K
polymorphism at baseline is strongly recommended. Alternative
therapy should be considered for patients infected with
HCV genotype 1a containing the Q80K
polymorphism.”

Rejection Criteria

HCV RNA
concentrations too low to allow antiviral resistance testing (less
than 1.0 mL of plasma and/or HCV viral
load less than 1,000 IU/mL), subtypes other than HCV 1a, whole blood frozen, specimens beyond their
acceptable length of time from collection as listed in the specimen
stability, or specimen types other than those listed.

Specimen Availability for Add-on Testing

This test cannot be added on

Specimen Stability

Frozen (preferred): 30 days
Refrigerated: 3 days
Ambient: not acceptable

Day(s) Performed

Varies

Performing Lab- Department

TUKHS-BH-Mail Outs

CPT Code

87902

LOINC Code

N/A

Test Alias

N/A

Additional Information / Notes

Turnaround time: 4-11 business days from receipt of
specimen.